PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007228.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 180aa    MW: 20829.5 Da    PI: 8.6516
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007228.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.99.2e-2881441128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.a...tk..sgyWk.atgk 88 
                  lp+GfrF Ptdeelv++yL +kv  +++++++ i+e+d    y+ +P++L  +++ +e+ew+fF+++ ++ +  ++++r +   +    g+Wk + g+
  Pbr007228.1   8 LPVGFRFMPTDEELVTHYLMNKVLYRPVPAAQEIREIDaaqFYSNHPKNLV-TFSCGEREWFFFIHHGESGH-ASQTSRsSirvVGngLGFWKpKYGS 103
                  79*************************887666666653338999*****6.777899*******9988765.344444233333344789**889** PP

          NAM  89 dkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                  ++++++++g+    k +L++++g +a+++++t+W + ey l
  Pbr007228.1 104 ETPICDEDGHFFASKISLTYFSGrSASHAKRTHWKLVEYYL 144
                  *********************995678899*********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-283154IPR003441NAC domain
PROSITE profilePS5100528.7078173IPR003441NAC domain
PfamPF023651.6E-159143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MIIGSNQLPV GFRFMPTDEE LVTHYLMNKV LYRPVPAAQE IREIDAAQFY SNHPKNLVTF  60
SCGEREWFFF IHHGESGHAS QTSRSSIRVV GNGLGFWKPK YGSETPICDE DGHFFASKIS  120
LTYFSGRSAS HAKRTHWKLV EYYLHEHDHV ESNTEEKYQV RRRKWILGRM IRGTDYTGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-12717014165Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464326.15e-63PREDICTED: protein ATAF2-like
TrEMBLB9RLR45e-47B9RLR4_RICCO; Transcription factor, putative
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144391218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-18NAC domain containing protein 32